Junk RNA Research Laboratory Software Resources

This blog has been created in order to compile many of the tools used in RNA labs, trying to be helpful for those who like playing and checking RNA sequences and structures.

11/09/2009

microRNA Predictions: miRBase::Sequences

Posted by David Martínez Nuñez at 12:14 am

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Gene information

  • NCBI
  • Gene Card
  • Ensembl
  • UCSC Genome Bioinformatics

Target predictions

  • TargetScan 7.0
  • miRanda Targets
  • miRBase Targets
  • Segal Lab
  • DIANA-microT v5.0
  • miRDB
  • PicTar
  • miRecords
  • MirTif
  • ViTa_miRNA targets on virus

microRNA Predictions

  • miRBase::Sequences
  • miRanda miRNA
  • Pic Tar
  • miRNA BioInfo
  • RISC Binder
  • RNA22 microRNA target detection & precursor prediction
  • CID-miRNA
  • MiPred
  • One Class miRNA Finder_Wistar
  • MiRscan
  • miRAlign
  • miRRim
  • miRNAminer
  • Argonaute 2
  • ProMir II_Probabilistic miRNA Predicition

Sequence utilities

  • BiBiServ RNA Studio
  • BCM Search Launcher

Find in this Blog

Junk RNA Research Laboratory

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RNA Related Blogs

  • EBI Tools
  • RegRNA
  • RNAi web

RNA structure

  • RNA Fold Webservice
  • RNA Hybrid Webservice
  • M.Zuker Web
  • SFold_Wadsworth Center
  • ERPIN_RNA Motif Search
  • M.Nelson and S.Istrail
  • GeneBee
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